| 08:30 – 09:45 | Enregistrement |
|---|---|
| 09:45 – 10:00 | Bienvenue |
| 10:00 – 11:00 | The mystery of intron splicing. Laurent Duret [abstract] |
| 11:00 – 11:25 | Recovering isofunctional genes: a synteny-based approach. Yves-Pol Denielou, Frédéric Boyer, Marie-France Sagot & Alain Viari |
| 11:25 – 11:50 | Prédiction de synténies dans le génome ancestral des amniotes. Frédéric Boyer, Cedric Chauve & Eric Tannier |
| 11:50 – 12:15 | Identification de gènes et prédiction de pertes de gènes par génomique comparative : Application au génome canin. Thomas Derrien, Catherine Andre, Elaine Ostrander, Francis Galibert & Christophe Hitte |
| 12:15 – 12:20 | Flash 1 – Selectome: a database of positive selection. Estelle Proux, Romain Studer, Sebastien Moretti & Marc Robinson-Rechavi |
| 12:20 – 12:25 | Flash 13 – Efficient tools for computing distances between two genomes with duplicate genes. Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thévenin & Stéphane Vialette |
| 12:25 – 12:30 | Flash 14 – Comparative & evolutive analysis of the ABC transporters repertories in the complete archaeal genomes. Bénédicte Wirth, Yves Quentin & Gwennaele Fichant |
| Déjeuner (salle R.U. Charles Debierre) | |
| 14:30 – 15:30 | Modelling protein structure, function and interactions. Michael J. E. Sternberg [abstract] |
| 15:30 – 15:55 | Protein thermal stability probed by statistical potentials. Benjamin Folch, Marianne Rooman & Yves Dehouck |
| Pause / posters numéros pairs / démos | |
| 16:40 – 17:05 | Study of structural changes in damaged DNA using DEER and Molecular Dynamic Simulations in Water. Samia Aci, Giuseppe Sicoli, Gérald Mathis, Didier Gasparutto, Serge Gambarelli & Yves Boulard |
| 17:05 – 17:30 | A method for automated discovering of RNA tertiary motifs. Mahassine Djelloul & Alain Denise |
| 17:30 – 17:55 | Une approche phylo-HMM pour la recherche de séquences. Jean-Baka Domelevo Entfellner & Olivier Gascuel |
| 17:55 – 18:00 | Flash 2 – High quality visualization of molecular skin surface. Matthieu Chavent, Bruno Levy & Bernard Maigret |
| 18:00 – 18:05 | Flash 3 - Classification of protein structures based on line-graph reduction. Guillaume Santini, Mathilde Carpentier & Joël Pothier |
| 18:05 – 18:10 | Flash 4 – A molecular modelling study to explain the regioselectivity of the CALB-catalyzed acetylation of rutin. Eduardo Basilio de Oliveira, Catherine Humeau, Latifa Chebil, Elaine Rose Maia, Bernard Maigret, Mohamed Ghoul & Jean-Marc Engasser |
| 18:10 – 18:15 | Flash 5 – Characterization of amino acid interaction networks in proteins. Omar Gaci & Stefan Balev |
| 18:45 | Cocktail à la Mairie de Lille |
| 09:00 – 10:00 | Discovering novel biology through computationally-driven experiments based on integrated analysis of functional genomics data. Olga Troyanskaya [abstract] |
|---|---|
| 10:00 – 10:25 | Semi-automated inference of regulatory pathways using perturbed data. Nizar Touleimat, Farida Zehraoui, Marie Dutreix & Florence d'Alché-Buc |
| Pause / posters numéros impairs / démos | |
| 11:10 – 11:35 | Applying a rigorous quasi-steady state approximation method for proving the absence of oscillations in models of genetic circuits. François Lemaire, François Boulier, Pierre-Emmanuel Morant and Marc Lefranc |
| 11:35 – 12:00 | A minimal and dynamic model for fatty acid metabolism in mouse liver. Pierre Blavy, Gondret Florence, Guillou Hervé, Sandrine Lagarrigue, Martin Pascal, Ovidiu Radulescu, Anne Siegel and Jaap Van Milgen |
| 12:00 – 12:05 | Flash 17 – Model-driven data integration for mining protein-ligand and protein-protein Interactions in a drug Design Context. Léo Ghemtio, Emmanuel Bresso, Michel Souchet, Bernard Maigret, Malika Smail-Tabbone & Marie-Dominique Devignes |
| 12:05 – 12:10 | Flash 10 – ACLAME: a database and bioinformatic tools to analyze, classify and predict the prokaryotic mobilome. Raphael Leplae, Gipsi Lima-Mendez, Jacques van Helden & Ariane Toussaint |
| 12:10 – 12:15 | Flash 11 – A benchmark of methods for horizontal transfer detection. Jennifer Becq, Cécile Churlaud & Patrick Deschavanne |
| 12:15 – 12:20 | Flash 12 – A comparative analysis of de novo methods for the identification of transposable elements in Drosophilidae genomes. Timothee Flutre, Elodie Duprat & Hadi Quesneville |
| 12:20 – 12:25 | Flash 9 – Modelling the oscillations in the p53-Mdm2 network. Djomangan Adama Ouattara, Wassim Abou-Jaoudé & Marcelle Kaufman |
| Déjeuner (salle R.U. Charles Debierre) | |
| 14:30 – 15:30 | Control and robustness in regulation networks: role of the miRNAs. Jacques Demongeot [abstract] |
| 15:30 – 15:55 | Temporal logic patterns for querying dynamic models of cellular interaction networks. Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas & Hidde de Jong |
| Pause / posters numéros pairs / démos | |
| 16:40 – 17:05 | libfbat: a C++ library for family based association testing. Gregory Nuel, Yousri Slaoui & Vincent Miele |
| 17:05 – 17:30 | Lowess extension to normalize three dyes cDNA microarray experiments. Julie Aubert, Marie-Laure Martin-Magniette, Samira Elftieh, Avner Bar-Hen, Jean-Pierre Renou & Jean-Jacques Daudin |
| 17:30 – 17:35 | Flash 18 – Un système interactif et extensible pour le mapping d’ontologies. Amel Bouzeghoub, Abdeltif Elbyed & Fariza Tahi |
| 17:35 – 17:40 | Flash 19 – Utilisation d'ontologies de tâches et de domaine pour la composition semi-automatique de services Web bioinformatiques. Nicolas Lebreton, Olivier Dameron, Christophe Blanchet & Julie Chabalier |
| 17:40 – 17:45 | Flash 6 – SSCA, an algorithm for selecting sequences to use in RNA secondary structure prediction by the comparative approach. Stéfan Engelen & Fariza Tahi |
| 17:45 – 17:50 | Flash 7 – Classification automatique en famille des jonctions triples de l'ARN. Dominique Barth, Alain Denise, Alexis Lamiable, Franck Quessette & Sandrine Vial |
| 17:50 – 17:55 | Flash 8 – Benchmarking RNA secondary structure comparison algorithms. Julien Allali, Yves d'Aubenton-Carafa, Cedric Chauve, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aida Ouangraoua, Marie-France Sagot, Cédric Saule, Michel Termier, Claude Thermes & Hélène Touzet |
| 18:00 – 19:00 | Assemblée générale de la Société Française de Bio-Informatique |
| Repas de gala |
| 09:00 – 10:00 | Informatics challenges in sequencing 1000 human genomes. Richard Durbin |
|---|---|
| 10:00 – 10:25 | Inference of Synechocystis protein interaction network. Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Corinne Cassier-Chauvat, Franck Chauvat, Jean-Christophe Aude, Pierre Legrain & Henning Hermjakob |
| 10:25 – 10:30 | Flash 16 – Mobyle: a new full web bioinformatics framework. Hervé Menager, Bertrand Neron, Corinne Maufrais, Nicolas Joly, Pierre Tufféry & Catherine Letondal |
| 10:35 – 10:40 | Flash 15 – Protein sequence alignment via anti translation. Marta Girdea, Gregory Kucherov & Laurent Noé |
| Pause / posters numéros impairs / démos | |
| 11:20 – 11:45 | Network modularity optimization by a fusion-fission process and application to protein-protein interactions networks. Jean-Baptiste Angelelli & Laurence Reboul |
| 11:45 – 12:10 | Fixed Boundaries Influence in Biological Networks: From Theory to Application. Jacques Demongeot, Michel Morvan & Sylvain Sené |
| Déjeuner (espace Flandres, Lille Grand Palais) | |
| 14:00 – 15:00 | Genetics and genomics: opportunities and treats. Jean-Jacques Cassiman [abstract] |
| 15:00 – 15:25 | Combining SAGE tags to predict genomic transcribed regions. Eric Rivals, Anthony Boureux, Mireille Lejeune, Florence Ottones, Oscar Pecharroman Pérez, Jorma Tarhio, Fabien Pierrat, Florence Ruffle, Thérèse Commes & Jacques Marti |
| 15:25 – 16:00 | Bilan annuel du GDR BIM – Présentation de JOBIM 2009 – au revoir |